2018
A rapid and robust method for single cell chromatin accessibility profiling.
Chen X, Miragaia RJ, Natarajan KN, Teichmann SA.
Published in: Nat Communications.
Comparative analysis of sequencing technologies platforms for single-cell transcriptomics.
Natarajan KN, Zhichao M, Jiang M, Huang X, Zhou H, Xie J, Wang C,
Qin S, Zhao Z, Wu L, Li B, Hou Y, Liu S, Teichmann SA.
Published in: bioRxiv.
Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T
helper cell differentiation by resolving secretory stress and
accelerating proliferation.
Pramanik J, Chen X, Kar G, Henriksson J,
Gomes T, Park JE, Natarajan K, Meyer KB, Miao Z, McKenzie ANJ,
Mahata B, Teichmann SA.
Published in: Genome Medicine.
Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions.
Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A,
Nutiu R, Teichmann SA, Bühler M
Published in: Life Science Alliance.
Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development.
Oatley M, Bolukbasi OV, Valentine Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV
, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes B, Patil KR, Teichmann SA, Lancrin C.
Published in: bioRxiv.
The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation.
Pramanik J, Chen X, Gozde K, Gomes T, Henriksson J, Miao Z, Natarajan KNN, McKenzie ANJ, Mahata B, Teichmann SA.
Published in: bioRxiv.
2017
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression.
Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Torlai Triglia E, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA
Published in: Nature Communications.
SC3: consensus clustering of single-cell RNA-seq data
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M.
Published in: Nature Methods.
Cell biology: tracking a cell’s cycle
Natarajan KN and Teichmann SA (Journalistic feature)
Published in: Nature methods.
Postdocs: What would you tell your younger self.
Natarajan KN (Special feature comment)
Published in: Cell.
Power analysis of single-cell RNA-sequencing experiments.
Svensson V*, Natarajan KN*, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA.
Published in: Nature Methods.
2016
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states
and progressive acceleration of proliferation.
Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J,
Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA.
Published in: Genome Biology.
The systems biology format converter.
Rodriguez N, Pettit JB, Dalle Pezze P, Li L, Henry A, van Iersel MP,
Jalowicki G, Kutmon M, Natarajan KN, Tolnay D, Stefan MI, Evelo CT, Le Novère N.
Published in: BMC Biology.
2015
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation.
Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J,
Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA
Published in: Cell Stem Cell.
Computational assignment of cell-cycle stage from single-cell transcriptome data.
Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F
Published in: Methods.
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data
reveals hidden subpopulations of cells.
Buettner F*, Natarajan KN*, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O.
Published in: Nature Biotechnology.
2014
BioModels: ten-year anniversary.
Chelliah V, Juty N, Ajmera I, Ali R, Dumousseau M, Glont M, Hucka M, Jalowicki G,
Keating S, Knight-Schrijver V, Lloret-Villas A, Natarajan KN, Pettit JB, Rodriguez N, Schubert M,
Wimalaratne SM, Zhao Y, Hermjakob H, Le Novère N, Laibe C
Published in: Nucleic Acid Research.
2011
The System Biology Format Converter.
Jalowicki G, Rodriguez N, Kutmon M, Pettit JB, Li L, Henry A, Natarajan KN, Laibe C, Evelo CT, Novere NL
Published in: Nature Precedings.
